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What does all this mean? from ubuntu terminal?

post #1 of 7
Thread Starter 
:-) Gromacs (-:

[12:44:13] Mapping NT from 8 to 8
Reading file work/wudata_03.tpr, VERSION 4.5.4-dev-20110530-cc815 (single precision)
Starting 8 threads
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'Overlay'
9250000 steps, 37000.0 ps (continuing from step 9000000, 36000.0 ps).
[12:44:16] Completed 0 out of 250000 steps (0%)

NOTE: Turning on dynamic load balancing

[13:39:39] Completed 2500 out of 250000 steps (1%)
[14:28:00] Completed 5000 out of 250000 steps (2%)
[15:16:21] Completed 7500 out of 250000 steps (3%)
[16:04:46] Completed 10000 out of 250000 steps (4%)
[16:53:05] Completed 12500 out of 250000 steps (5%)

Step 9014417, time 36057.7 (ps) LINCS WARNING
relative constraint deviation after LINCS:
rms 0.022837, max 2.481367 (between atoms 47234 and 47233)
bonds that rotated more than 90 degrees:
atom 1 atom 2 angle previous, current, constraint length
47234 47233 90.0 0.0802 0.2793 0.0802
47239 47234 90.5 0.1583 0.1879 0.1583

step 9014417: Water molecule starting at atom 2194966 can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.

Step 9014418, time 36057.7 (ps) LINCS WARNING
relative constraint deviation after LINCS:
rms inf, max 24325071885381402624.000000 (between atoms 63169 and 63163)
bonds that rotated more than 90 degrees:
atom 1 atom 2 angle previous, current, constraint length
63170 63169 90.8 0.1530 1502388631111729152.0000 0.1530
63172 63171 90.9 0.1610 145235023488876544.0000 0.1610
63176 63175 95.3 0.1430 73949990988283904.0000 0.1430
63177 63176 90.0 0.1530 365956124429516800.0000 0.1530
63178 63177 90.8 0.1530 1485853350619512832.0000 0.1530
63198 63197 105.5 0.1360 72617589053849600.0000 0.1360
63200 63198 101.8 0.1530 16573367188455424.0000 0.1530
63199 63198 97.6 0.1230 16652859516911616.0000 0.1230
63201 63200 118.9 0.1530 5849213954949120.0000 0.1530
47234 47233 90.7 0.2793 0.1201 0.0802
47239 47234 92.9 0.1879 0.1767 0.1583

step 9014418: Water molecule starting at atom 2194966 can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.
Warning: 1-4 interaction between 63178 and 63181 at distance 2146836421834240000.000 which is larger than the 1-4 table size 2.700 nm
These are ignored for the rest of the simulation
This usually means your system is exploding,
if not, you should increase table-extension in your mdp file
or with user tables increase the table size

-------------------------------------------------------
Program Gromacs, VERSION 4.5.3
Source code file: /vspm58/VM/fah-converted/mnt/fah_windows_build/LinuxBuilds/gromacs-4.5.3/src/mdlib/pme.c, line: 534

Fatal error:
28 particles communicated to PME node 5 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
This usually means that your system is not well equilibrated.
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day

[17:30:17] mdrun returned 255
[17:30:17] Going to send back what have done -- stepsTotalG=250000
[17:30:17] Work fraction=624.2197 steps=250000.
[17:30:21] logfile size=29485 infoLength=29485 edr=25 trr=1
[17:30:21] logfile size: 29485 info=29485 bed=25 hdr=1
[17:30:21] - Writing 30023 bytes of core data to disk...
[17:30:21] Done: 29511 -> 6690 (compressed to 22.6 percent)
[17:30:21] ... Done.
[17:30:27]
[17:30:27] Folding@home Core Shutdown: UNSTABLE_MACHINE
[17:30:28] CoreStatus = 7A (122)
[17:30:28] Sending work to server
[17:30:28] Project: 6903 (Run 6, Clone 4, Gen 36)


[17:30:28] + Attempting to send results [October 18 17:30:28 UTC]
[17:30:29] > Press "c" to connect to the server to upload results
c[17:50:21] - Establishing connection


it was not done tho, only 5% was done.
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post #2 of 7
Quote:
Originally Posted by thrgk View Post
[17:30:27] Folding@home Core Shutdown: UNSTABLE_MACHINE
[17:30:28] CoreStatus = 7A (122)
This would be a OC gone bad, what the code (7A (122)) means more precisely someone else have to take care of.
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post #3 of 7
Thread Starter 
ram unstable or cpu unstable? its so weird lol, its been stable at 4.8ghz for months, now all of a sudden all these issues, must be the ram, because thats all that i changed.
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post #4 of 7
Stable = folding? The only thing I can find in Fahwiki is that 7A relates to GPU folding, and you're folding with your CPU so can't help you more in depth.

A tip to, put the log inside [ code ] tags, it will be easier to se what's what.
Edited by arvidab - 10/18/11 at 11:13am
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post #5 of 7
I'm gonna blame the CPU OC on this one.

As for the text, Linux gives more info than Windows; it's still just and UNSTABLE_MACHINE error.
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post #6 of 7
Quote:
Originally Posted by zodac View Post
I'm gonna blame the CPU OC on this one.
Not RAM?
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post #7 of 7
Not this time, no.
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