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F@H Work Unit Updates - Page 4

post #31 of 50
Thread Starter 
Subject: New SMP Project 8084 released for testing
Quote:
Originally Posted by diwakar 
Project Description:
The Src family protein tyrosine kinases are enzymes that play key roles in transducing cellular signals regulating cell growth, differentiation, proliferation, migration and survival. These enzymes are responsible for diseases such as cancer in which the cells undergo uncontrolled growth and proliferation. Crystallographic x-ray structures of human c-Src in the inactive and active conformation allow clear structural distinctions to be drawn between the inactive and active states. Those x-ray structures, though rich in information about the two end-points of the activation event, do not show how the activation occurs and how it might be regulated. Simulations and computational models, at different levels of approximation, can complement some of the missing information about Src and help address these important questions. Characterizing conformational transitions in large biomolecules such as Src is challenging, however, because the slow processes are not easily observed during simple unbiased molecular dynamics (MD) simulations. To circumvent those difficulties, previous studies of Src by our collaborators have used biased sampling techniques such as string method to get the series of structures which show the structural changes involved in the activation process. In this project, we perform simulations of src kinase from the structures obtained using the string method to get a more detailed picture of the activation process. This project is similar to FAH projects 8041 and 8042.

Stats:
Points:96 ; timeout:1.77 days; deadline:3.82 days;

This project will run on both single and multiprocessor clients.

Please let me know if there are any issues.
post #32 of 50
Thread Starter 
Subject: New SMP projects 6351, 6352, 6353 released to beta
Quote:
Originally Posted by vvoelz 
These projects are identical to 6339, 6340, and 6341 (respectively), but are being simulated at a slightly higher temperature. Public descriptions will be up soon.

{'id': 6351, 'type': 'GRO-A4', 'credit': 166, 'timeout': 3, 'deadline': 7, 'description': 'p6351', 'contact': 'vvoelz', 'natoms': 137, 'client_type': 'BETA', 'deadline_factor': '0.75'},
{'id': 6352, 'type': 'GRO-A4', 'credit': 166, 'timeout': 3, 'deadline': 7, 'description': 'p6352', 'contact': 'vvoelz', 'natoms': 137, 'client_type': 'BETA', 'deadline_factor': '0.75'},
{'id': 6353, 'type': 'GRO-A4', 'credit': 174, 'timeout': 3.2, 'deadline': 7, 'description': 'p6353', 'contact': 'vvoelz', 'natoms': 140, 'client_type': 'BETA', 'deadline_factor': '0.75'},

Vince

Subject: new SMP project 6345 released for beta
Quote:
Originally Posted by vvoelz 
After a brief stint of public release for this project, (where it caused problems) I have re-built this project and am re-releasing this for beta-testing. Please let me know if you are able to download and complete successfully. --VInce

All 4 are updates to HFM since yesterday.
post #33 of 50
Have you got any yet? How are the points after bonus?
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The main rig
(18 items)
 
The Wife's Rig
(15 items)
 
minecraft box
(9 items)
 
CPUMotherboardGraphicsRAM
Intel Core i7 3770K at 4.5ghz Asus z77 Maximus V Formula evga NVIDIA GeForce GTX 780 Classified Samsung "Wonder Ram" 8gb (4x2) @ 1866 mhz 
Hard DriveHard DriveHard DriveOptical Drive
ocz vertex 4 256 gb ssd Western Digital cavier green hdd 1tb Sea Gate 1.5 tb hdd Samsung External Blue Ray Writer 
CoolingCoolingOSMonitor
Xspc rasa 750 rx360 with 3 sp120s Bitfinex Fan Controller Windows 8.1 Professional Acer 23 inch led 
KeyboardPowerCaseMouse
Logitech G510 Seasonic 750 watt fully modular Black Nzxt Switch 810 Razor Deathadder 
OtherOther
Asus mpcie wifi adaptor Azio usb Bluetooth dongle 
CPUMotherboardGraphicsRAM
i5 3570k @ 4.5 ghz Asus Maximus IV Gene-z68 Evga NVIDIA GTX 780 Classified 8 gb Samsung "Wonder Ram" @ 2133 mhz 
Hard DriveHard DriveOptical DriveCooling
320 gb western digital intel ssd LG Blue Ray Drive Corsair H100 
CoolingOSMonitorKeyboard
4 stock corsair fans on h100 Windows 8.1 Acer 23 inch led Logitech G510 
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Rosewill Capstone 750 watt NZXT Switch 810 black Razor Deathadder 
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Intel Core 2 Quad Q9400 GIGABYTE GA-G41MT-S2PT G41 + ICH7 Micro ATX  GTX 670 FTW 8 GB DDR3 
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post #34 of 50
Thread Starter 
Those 4 are SMP2 only so I haven't gotten any.
post #35 of 50
looks like I wont get any either, lol.
The main rig
(18 items)
 
The Wife's Rig
(15 items)
 
minecraft box
(9 items)
 
CPUMotherboardGraphicsRAM
Intel Core i7 3770K at 4.5ghz Asus z77 Maximus V Formula evga NVIDIA GeForce GTX 780 Classified Samsung "Wonder Ram" 8gb (4x2) @ 1866 mhz 
Hard DriveHard DriveHard DriveOptical Drive
ocz vertex 4 256 gb ssd Western Digital cavier green hdd 1tb Sea Gate 1.5 tb hdd Samsung External Blue Ray Writer 
CoolingCoolingOSMonitor
Xspc rasa 750 rx360 with 3 sp120s Bitfinex Fan Controller Windows 8.1 Professional Acer 23 inch led 
KeyboardPowerCaseMouse
Logitech G510 Seasonic 750 watt fully modular Black Nzxt Switch 810 Razor Deathadder 
OtherOther
Asus mpcie wifi adaptor Azio usb Bluetooth dongle 
CPUMotherboardGraphicsRAM
i5 3570k @ 4.5 ghz Asus Maximus IV Gene-z68 Evga NVIDIA GTX 780 Classified 8 gb Samsung "Wonder Ram" @ 2133 mhz 
Hard DriveHard DriveOptical DriveCooling
320 gb western digital intel ssd LG Blue Ray Drive Corsair H100 
CoolingOSMonitorKeyboard
4 stock corsair fans on h100 Windows 8.1 Acer 23 inch led Logitech G510 
PowerCaseMouse
Rosewill Capstone 750 watt NZXT Switch 810 black Razor Deathadder 
CPUMotherboardGraphicsRAM
Intel Core 2 Quad Q9400 GIGABYTE GA-G41MT-S2PT G41 + ICH7 Micro ATX  GTX 670 FTW 8 GB DDR3 
Hard DriveOptical DriveCoolingOS
500 gb seagate cd burner/ dvd player H80 in push pull Windows 7 
Power
Thermaltake 600 Watt 
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Reply
The main rig
(18 items)
 
The Wife's Rig
(15 items)
 
minecraft box
(9 items)
 
CPUMotherboardGraphicsRAM
Intel Core i7 3770K at 4.5ghz Asus z77 Maximus V Formula evga NVIDIA GeForce GTX 780 Classified Samsung "Wonder Ram" 8gb (4x2) @ 1866 mhz 
Hard DriveHard DriveHard DriveOptical Drive
ocz vertex 4 256 gb ssd Western Digital cavier green hdd 1tb Sea Gate 1.5 tb hdd Samsung External Blue Ray Writer 
CoolingCoolingOSMonitor
Xspc rasa 750 rx360 with 3 sp120s Bitfinex Fan Controller Windows 8.1 Professional Acer 23 inch led 
KeyboardPowerCaseMouse
Logitech G510 Seasonic 750 watt fully modular Black Nzxt Switch 810 Razor Deathadder 
OtherOther
Asus mpcie wifi adaptor Azio usb Bluetooth dongle 
CPUMotherboardGraphicsRAM
i5 3570k @ 4.5 ghz Asus Maximus IV Gene-z68 Evga NVIDIA GTX 780 Classified 8 gb Samsung "Wonder Ram" @ 2133 mhz 
Hard DriveHard DriveOptical DriveCooling
320 gb western digital intel ssd LG Blue Ray Drive Corsair H100 
CoolingOSMonitorKeyboard
4 stock corsair fans on h100 Windows 8.1 Acer 23 inch led Logitech G510 
PowerCaseMouse
Rosewill Capstone 750 watt NZXT Switch 810 black Razor Deathadder 
CPUMotherboardGraphicsRAM
Intel Core 2 Quad Q9400 GIGABYTE GA-G41MT-S2PT G41 + ICH7 Micro ATX  GTX 670 FTW 8 GB DDR3 
Hard DriveOptical DriveCoolingOS
500 gb seagate cd burner/ dvd player H80 in push pull Windows 7 
Power
Thermaltake 600 Watt 
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post #36 of 50
Thread Starter 
Subject: New SMP Project 8084 released for testing
Quote:
Originally Posted by diwakar 
Moving project 8084 to advanced now. Thanks.
post #37 of 50
Thread Starter 
Subject: New SMP projects 6347-50 released to beta
Quote:
Originally Posted by vvoelz 
I'm releasing new A4 core jobs projects to beta, served from vav3.ocis.temple.edu. These are ~3k-atom explicit-solvent simulations of the LapD hairpin that should parallelize well on multicore machines:

6347 LapD H-GLX-E-Z in TIP3P 300K (3126 atoms)
6348 LapD H-GLX-E-Z in TIP3P 350K (3126 atoms)
6349 LapD H-GLX-E-Z in TIP3P 300K (3129 atoms)
6350 LapD H-GLX-E-Z in TIP3P 350K (3129 atoms)

All have credit=166, timeout=3, deadline=7

Please let me know if you pick up any --Vince

ATM these also have problems running SMP7. So if you get 5 of these in a row or see your SMP client stopped it may have stopped because of this.
post #38 of 50
Thread Starter 
Some new SMP Beta Units.

Subject: New SMP projects 10137-10139
Quote:
Originally Posted by gbowman 
These projects fold on SMP A3 (multiprocessor) clients.

STATS:
Point: 1537
timeout: 7
deadline:12

Bacterial infections are adept at evading the drugs we design to kill them. For example, millions of people die every year from infections with bacteria that produce Beta-lactamase proteins to break down penicillin-like antibiotics. Therefore, we would like to understand how Beta-lactamases function and how we can shut them down to restore the efficacy of existing antibiotics. The objective of this project is to understand the structure and dynamics of Beta-lactamase, how they contribute to the protein’s function, and how we can manipulate them to prevent Beta-lactamases from functioning.

No reports on TPF or PPD yet on FF but I'd guess it'll be pretty long. Base credit for 7808 are at 1698.09, so something like that.

Edit: As a note, these are beta. They may fail (SMP7 as my first guess) so please report to FF if you are a beta member or at least here and I can forward it on.
Edited by mmonnin - 3/18/13 at 8:49pm
post #39 of 50
What flag do i need on the 7.3.6 Client? Will my Q6600 or Q9550 run it? If this was already answered, my bad. wink.gif
 
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Hard DriveHard DriveHard DriveOptical Drive
Crucial MX100 128GB SATA III SSD (OS) Western Digital 2TB SATA III (Data) Crucial MX300 275GB SATA III SSD (Game) LG SATA Light-Scribe DVD+/-RW Drive 
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What Pad? >_< Logitech Z4 2.1 Stereo System  
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Seagate 160GB DVD/CD Writer/Burner Cooler Master 92mm Windows 7 64 Bit Ultimate Basic 
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16GB Samsung ECC RAM DDR2 800Mhz Seagate Barrcuda 500GB 7,200RPM (OS) DVD/CD Writer/Burner Dual Intel Xeon Heatsinks w/ 200mm Delta Fan 
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post #40 of 50
Thread Starter 
Oh my bad, usually it's in the thread title from FF but those are new beta units. That's usually what the updates are, new projects released to beta.

Those CPUs should get these units.
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