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So I just noticed after a few reboots that the AI Suite II application that came with my M5A97 R2.0 motherboard, keeps turning off the chassis fans of my server. It only happens when I launch the AI Suite app too. Like I can reboot it right now, things will run fine until I launch the application.

the only way I can get them to turn back on (while in Windows) is to go to the Fan Xpert app, under chassis and change the status from Disabled to Normal. It's weird and it won't save that setting. Also, after I do that, the fan speeds report a 5 digit number instead of a regular 4 digit number (ie, 16098 when it should be like 1800rpm)

What is the deal with this thing and how do I get it to stop?

I have in my BIOS setting the performance set to Silent, that's where I want it to be.