You also have to make sure to look at the bottom of the board for the cooler's backplate to see if there's parts that will be in the way.
An example, this board looks very similar to yours: http://www.msi.com/pic/product/five_pictures6_2702_20121012171109.jpg
It's the MSI FM2-A75IA-E53. The Noctua site has a compatibility list for all the Noctua coolers. If you look at that list for a 120mm cooler, which should be similar size as Hyper 212, this board is mentioned as having its PCI-E slot getting blocked by the 120mm cooler.
Edited by deepor - 9/28/13 at 11:53am