http://www.doom9.org
You should be using VirtualDUB for all your movie needs. Also, install all the extension plugins for it, which will let you do what you are trying to do.
Any reason you are converting it to lossless? That's a waste of space and time!
edit-Also, MKV is a container, not a codec or format, as is AVI. So you need to find out what the source video codec is, and the source audio codec, and rip both from the MKV into AVI and WAV containers. Then when you've got your video converted to the codec you want, and possibly audio as well, then just put them back together using VDUB as a final step. I personally split my A/V right off the bat, work on each individually, then when they're both done, put them back together into the same container (AVI).
You should be using VirtualDUB for all your movie needs. Also, install all the extension plugins for it, which will let you do what you are trying to do.
Any reason you are converting it to lossless? That's a waste of space and time!
edit-Also, MKV is a container, not a codec or format, as is AVI. So you need to find out what the source video codec is, and the source audio codec, and rip both from the MKV into AVI and WAV containers. Then when you've got your video converted to the codec you want, and possibly audio as well, then just put them back together using VDUB as a final step. I personally split my A/V right off the bat, work on each individually, then when they're both done, put them back together into the same container (AVI).