I recently purchased the Fractal R2 Mini (Great case BTW and highly recommended) and the H80i. I was undecided about which way to direct the fans across the radiator so i conducted testing in both ways and was surprised by the results. Prime 95 and Heaven Benchmark were ran for 15 mins each. Temperatures were measured at the end of each test. Test area temperature outside the case was 22 C. Corsair Link software was used for temperature verification as well as MSI Afterburner. Custom fan curve was used in Afterburner. Balanced mode was used in the Corsair software thus the fans were spinning at around 1400 RPM. System was booted up both times and allowed to idle for 20 minutes before test. GPU was running at stock speeds of 925/1250. Power boost was set to 20% + in Afterburner to prevent the core from fluctuating. Arctic MX-4 was used on the H80i using the dot method. Interior case temps were taken in Fahrenheit and converted to Celsius. All case fans were running in 12 v mode.
Custom Fan Curve in MSI Afterburner:

Test Bed:
Motherboard: GIgabyte Z97MX Gaming 5
CPU: Intel [email protected] 4.0ghz (1.121 v)
Power Supply: XFX 550w
Video Card: Power Color 7950 Boost+ (925 mhz core, custom style cooler, does not exhaust out of the case)
Memory: PNY 8GB x 1 DDR3 1600
Hard drive: Samsung 850 Evo 250 gb
Case: Fractal R2 Mini. (Fan placement as follows: 2 x 140 mm in the top in exhaust, 2 x 120 mm in the front as intake)
Corsair H80i
Programs used in test:
Heaven Benchmark 4.0
Prime 95 v 28.5 in blend mode.
The circled area in the picture below was were the temperature was taken from. Notice how close it is to the GPU and it's placement is right in front of 2 x 120 mm intake fans.

Test 1: Fans in intake configuration:
Interior case temperature at start of test: 23.88 C.
Heaven Benchmark GPU max temp: 64 C.
CPU average temp during Heaven Benchmark: 46 C.
Interior case temperature at completion of Heaven Benchmark: 28.8 C.
Interior case temperature at start of Prime 95: 28.8 C.
Interior case temperature at completion of Prime 95: 26.6 C.
CPU max temp during Prime 95: 62 C.
Test 2: Fans in exhaust configuration:
Interior case temperature at start of test: 24.16 C.
Heaven Benchmark GPU max temp: 56 C.
CPU average temp during Heaven Benchmark: 44 C.
Interior case temperature at completion of Heaven Benchmark: 23.8 C.
Interior case temperature at start of Prime 95: 23.8 C.
Interior case temperature at completion of Prime 95: 23.8 C.
CPU max temp during Prime 95: 58 C.
I was shocked by the results. Not only did the CPU obtain better results in exhaust, but EVERYTHING inside the case was much cooler. I didn't record the thermal sensors on the motherboard but i remember them being considerably lower in exhaust mode. My theory for why exhaust is so much cooler is pretty simple. Heat rises but if enough heat builds at the top, it has no where to go but start going down. The 2 x 140 mm fans at the top simply could not keep up with the heat load being produced in intake configuration. My guess is if you have a reference style cooler and your GPU heat can be exhausted out the back, temperatures may be slightly better in intake configuration. However, i still think overall that the intake configuration will fair worst than exhaust if the back of your case is close to a wall (my case is 4 inches/101.6 mm from the wall). The reason behind this is all the heat is exhausted out the back of your case by your PSU and GPU. The heat will rise and be pulled in by the Corsair fans in intake mode. Not everyone's configuration will be this way but for majority of PC builders these principles will apply. Below are some pics of my finished build. Hope this can save some one the trouble of figuring out which way is best if they have a similar configuration.


Custom Fan Curve in MSI Afterburner:
Test Bed:
Motherboard: GIgabyte Z97MX Gaming 5
CPU: Intel [email protected] 4.0ghz (1.121 v)
Power Supply: XFX 550w
Video Card: Power Color 7950 Boost+ (925 mhz core, custom style cooler, does not exhaust out of the case)
Memory: PNY 8GB x 1 DDR3 1600
Hard drive: Samsung 850 Evo 250 gb
Case: Fractal R2 Mini. (Fan placement as follows: 2 x 140 mm in the top in exhaust, 2 x 120 mm in the front as intake)
Corsair H80i
Programs used in test:
Heaven Benchmark 4.0
Prime 95 v 28.5 in blend mode.
The circled area in the picture below was were the temperature was taken from. Notice how close it is to the GPU and it's placement is right in front of 2 x 120 mm intake fans.
Test 1: Fans in intake configuration:
Interior case temperature at start of test: 23.88 C.
Heaven Benchmark GPU max temp: 64 C.
CPU average temp during Heaven Benchmark: 46 C.
Interior case temperature at completion of Heaven Benchmark: 28.8 C.
Interior case temperature at start of Prime 95: 28.8 C.
Interior case temperature at completion of Prime 95: 26.6 C.
CPU max temp during Prime 95: 62 C.
Test 2: Fans in exhaust configuration:
Interior case temperature at start of test: 24.16 C.
Heaven Benchmark GPU max temp: 56 C.
CPU average temp during Heaven Benchmark: 44 C.
Interior case temperature at completion of Heaven Benchmark: 23.8 C.
Interior case temperature at start of Prime 95: 23.8 C.
Interior case temperature at completion of Prime 95: 23.8 C.
CPU max temp during Prime 95: 58 C.
I was shocked by the results. Not only did the CPU obtain better results in exhaust, but EVERYTHING inside the case was much cooler. I didn't record the thermal sensors on the motherboard but i remember them being considerably lower in exhaust mode. My theory for why exhaust is so much cooler is pretty simple. Heat rises but if enough heat builds at the top, it has no where to go but start going down. The 2 x 140 mm fans at the top simply could not keep up with the heat load being produced in intake configuration. My guess is if you have a reference style cooler and your GPU heat can be exhausted out the back, temperatures may be slightly better in intake configuration. However, i still think overall that the intake configuration will fair worst than exhaust if the back of your case is close to a wall (my case is 4 inches/101.6 mm from the wall). The reason behind this is all the heat is exhausted out the back of your case by your PSU and GPU. The heat will rise and be pulled in by the Corsair fans in intake mode. Not everyone's configuration will be this way but for majority of PC builders these principles will apply. Below are some pics of my finished build. Hope this can save some one the trouble of figuring out which way is best if they have a similar configuration.