If you short stroke by either using Niagra or similar (the manufacturer's tools for doing it properly), or by just creating a smaller array in the RAID setup BIOS you can benchmark a short-stroked setup with any software you care to use.
If you do it by creating a smaller OS partition then there are a few programs that bench partitions rather than the full disk. I think Everest does this - but it may not, I can never remember the correct bit of software. I only have my disks short stroked in the RAID BIOS so don't need to remember...
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