Not sure if I'm posting in the right section, and this probably isn't the best site for this type of thing but I've tried 3 other sties just for Macs and there hasn't been any help. You guys seem to know a lot about logic boards and thermal paste, so I hope you can help.
I've taken apart 2 2011 MacBook Pros that have graphics card failures - it's very very common in this model. So at this point it was throw them in the trash or try to reflow them in the oven, and I opted for the latter. I prepped the first one - removed the heat sink and thermal paste that goes over the cpu and gpu, and 2 smaller heatsinks on an IO Controller chip and a Thunderbolt? chip, and removed any plastic that I was able - and baked the first one on 365 F for 7 minutes.
When I was reassembling, I noticed that there was a gap between the small square heatsinks and the chips that didn't seem to be filled by the appropriate amount of thermal paste. So I put a little bit of extra and just bent the screw tabs upwards so that the heat sink sat lower closer to the chip. Reinstalled the OS successfully and everything seemed okay. It seemed a little sluggish, but that could have had something to do with the 0% capacity battery or Spotlight indexing. I didn't really want to do much else with it until I replace the battery.
So my question is, on this 2nd motherboard, is it okay to leave the 2 smaller heatsinks on the board when I bake it? Is there a thicker thermal paste than the arctic silver that I should use for those 2? Or is bending the heat sinks probably okay to do? Someone elsewhere on the internet modded it with some copper pieces to fill in the gap, but I don't have any lying around and am not terribly thrilled with that course of action.
Here are a few pictures so you have a basic idea what I am talking about.
Chips without heat sinks - the red and blue are the 2 in question
Here they are in the top right with the square heat sinks covering them

I've taken apart 2 2011 MacBook Pros that have graphics card failures - it's very very common in this model. So at this point it was throw them in the trash or try to reflow them in the oven, and I opted for the latter. I prepped the first one - removed the heat sink and thermal paste that goes over the cpu and gpu, and 2 smaller heatsinks on an IO Controller chip and a Thunderbolt? chip, and removed any plastic that I was able - and baked the first one on 365 F for 7 minutes.
When I was reassembling, I noticed that there was a gap between the small square heatsinks and the chips that didn't seem to be filled by the appropriate amount of thermal paste. So I put a little bit of extra and just bent the screw tabs upwards so that the heat sink sat lower closer to the chip. Reinstalled the OS successfully and everything seemed okay. It seemed a little sluggish, but that could have had something to do with the 0% capacity battery or Spotlight indexing. I didn't really want to do much else with it until I replace the battery.
So my question is, on this 2nd motherboard, is it okay to leave the 2 smaller heatsinks on the board when I bake it? Is there a thicker thermal paste than the arctic silver that I should use for those 2? Or is bending the heat sinks probably okay to do? Someone elsewhere on the internet modded it with some copper pieces to fill in the gap, but I don't have any lying around and am not terribly thrilled with that course of action.
Here are a few pictures so you have a basic idea what I am talking about.
Chips without heat sinks - the red and blue are the 2 in question
Here they are in the top right with the square heat sinks covering them