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I have a single 480 radiator in my 800D and I love it. I think with your loop a thick single 480 radiator would give you enough cooling power without having to mod the bottom. If you just mod the bottom to mount a 240 radiator horizontally the air it sucks in will be warmed before going through the 480, making it almost useless. The correct way to mod the bottom is to cut holes in the side of the case for exhaust to allow for the hot air from the 240mm radiator to be exhausted out the side of the case before it can interfere with the 480.
I would let the pump run power all of the time, however if the noise bothers you hooking it up to the CPU PWM header is a good way to have it automatically controlled.
I would let the pump run power all of the time, however if the noise bothers you hooking it up to the CPU PWM header is a good way to have it automatically controlled.